Performance Report for HIV RT

Positions with gap weight greater than or equal to .5 excluded:
"1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 70, 197"
 
Columns numbered by alignment position

PHENOTYPES
Positive:
+ + +
Intermediate:
+ +  
+    
Negative:
-    

MAPP: Positive (P) vs. Deleterious (I + N)			

		Experimental	
		Deleterious	Positive
Predicted	Deleterious	144	16
	Positive	114	88

Deleterious Accuracy		0.55814	
Positive Accuracy		0.846154	
Overall Accuracy		0.640884	


SIFT: Positive (P) vs. Deleterious (I + N)			

		Experimental	
		Deleterious	Positive
Predicted	Deleterious	167	72
	Positive	91	32

Deleterious Accuracy		0.647287	
Positive Accuracy		0.307692	
Overall Accuracy		0.549724	


MAPP: Weak (P + I) vs. Strong (N)			

		Experimental	
		Strong	Weak
Predicted	Strong	78	44
	Weak	36	204

Strong Accuracy		0.684211	
Weak Accuracy		0.822581	
Overall Accuracy		0.779006	


MAPP: Intermediate vs. Negative			

		Experimental	
		Negative	Intermediate
Predicted	Negative	78	34
	Intermediate	36	110

Negative Accuracy		0.684211	
Intermediate Accuracy		0.763889	
Overall Accuracy		0.728682