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Encode Project Consortium
The ENCODE (ENCyclopedia Of DNA Elements) project.
Science. 2004 Oct 22;306(5696):636-40.
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Johnson DS, Davidson B, Brown CD, Smith WC, Sidow A.
Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance.
Genome Res. 2004 Dec;14(12):2448-56.
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Sundarajan M, Brudno M, Small K, Sidow A, Batzoglou S.
Chaining algorithms for alignment of draft sequence.
WABI 2004, LNBI 3240, pp. 326–37.
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Cooper GM, Singaravelu SAG, Sidow A
ABC: software for interactive browsing of genomic multiple sequence alignment data.
BMC Bioinformatics 2004, 5:192
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Cooper GM, Brudno M, Stone EA, Dubchak I, Batzoglou S, Sidow A.
Characterization of evolutionary rates and constraints in three mammalian genomes.
Genome Res. 2004 Apr;14(4):539-48.
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Rat Genome Sequencing Project Consortium.
Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
Nature. 2004 Apr 1;428(6982):493-521.
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Brudno M, Poliakov A, Salamov A, Cooper GM, Sidow A, Rubin EM, Solovyev V, Batzoglou S, Dubchak I.
Automated whole-genome multiple alignment of rat, mouse, and human.
Genome Res. 2004 Apr;14(4):685-92.
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Cooper GM, Sidow A.
Genomic regulatory regions: insights from comparative sequence analysis.
Curr Opin Genet Dev. 2003 Dec;13(6):604-10.
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Aburomia R, Khaner O, Sidow A.
Functional evolution in the ancestral lineage of vertebrates or when genomic complexity was wagging its morphological tail.
J Struct Funct Genomics. 2003;3(1-4):45-52.
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Cooper GM, Brudno M, Green ED, Batzoglou S, Sidow A.
Quantitative estimates of sequence divergence for comparative analyses of mammalian genomes.
Genome Res. 2003 May;13(5):813-20.
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Brudno M, Do CB, Cooper GM, Kim MF, Davydov E, Green ED, Sidow A, Batzoglou S.
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.
Genome Res. 2003 Apr;13(4):721-31.
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Ko DC, Binkley J, Sidow A, Scott MP.
The integrity of a cholesterol-binding pocket in Niemann-Pick C2 protein is necessary to control lysosome cholesterol levels.
Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2518-25.
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Sidow A.
Sequence first. Ask questions later.
Cell. 2002 Oct 4;111(1):13-6.
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Simon AL, Stone EA, Sidow A.
Inference of functional regions in proteins by quantification of evolutionary constraints.
Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2912-7.
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Serluca FC, Sidow A, Mably JD, Fishman MC.
Partitioning of tissue expression accompanies multiple duplications of the Na+/K+ ATPase alpha subunit gene.
Genome Res. 2001 Oct;11(10):1625-31.
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Rieger DK, Reichenberger E, McLean W, Sidow A, Olsen BR.
A double-deletion mutation in the Pitx3 gene causes arrested lens development in aphakia mice.
Genomics. 2001 Feb 15;72(1):61-72.